STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_00182Pre-mRNA-splicing factor cwc2. (245 aa)    
Predicted Functional Partners:
VDBG_01913
Pre-mRNA-splicing factor slt-11.
   
 
 0.994
VDBG_05117
Pre-mRNA-splicing factor clf1.
    
 
 0.994
VDBG_05870
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.994
VDBG_08227
Pre-mRNA-splicing factor SYF1.
   
 
 0.994
VDBG_02178
Pre-mRNA-splicing factor ISY1.
   
 
 0.993
VDBG_08921
Pre-mRNA-splicing factor SYF2.
    
 
 0.993
VDBG_07798
Cell cycle control protein cwf8.
    
 
 0.991
VDBG_08320
Pre-mRNA-splicing factor CWC26.
    
 
 0.991
VDBG_03904
Pre-mRNA-processing factor 17.
    
 0.990
VDBG_03736
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.990
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.