STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_00226Uncharacterized protein. (264 aa)    
Predicted Functional Partners:
VDBG_04912
Nuclear pore glycoprotein p62.
    
 
 0.595
VDBG_00252
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
    
 
 0.565
VDBG_00228
Uncharacterized protein.
 
      0.551
VDBG_04126
Predicted protein.
  
 
 0.515
VDBG_05555
Nuclear envelope protein.
    
 
 0.485
VDBG_04715
Uncharacterized protein.
  
 
 
 0.450
VDBG_06834
Uncharacterized protein.
  
 
 
 0.420
VDBG_06680
Uncharacterized protein.
    
 
 0.416
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.