Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_01575 | VDBG_01576 | C9SAL8 | C9SAL9 | Cytochrome c oxidase assembly protein COX11. | Amine oxidase. | 0.871 |
VDBG_01575 | VDBG_01828 | C9SAL8 | C9SBI5 | Cytochrome c oxidase assembly protein COX11. | Uncharacterized protein. | 0.565 |
VDBG_01575 | VDBG_01829 | C9SAL8 | C9SBI6 | Cytochrome c oxidase assembly protein COX11. | SCO2. | 0.797 |
VDBG_01575 | VDBG_02019 | C9SAL8 | C9SC26 | Cytochrome c oxidase assembly protein COX11. | SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. | 0.814 |
VDBG_01575 | VDBG_07103 | C9SAL8 | C9SQ68 | Cytochrome c oxidase assembly protein COX11. | Protoheme IX farnesyltransferase. | 0.863 |
VDBG_01575 | VDBG_08042 | C9SAL8 | C9ST17 | Cytochrome c oxidase assembly protein COX11. | Electron transfer protein. | 0.799 |
VDBG_01575 | VDBG_17008 | C9SAL8 | C9SZA6 | Cytochrome c oxidase assembly protein COX11. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.882 |
VDBG_01575 | VDBG_17011 | C9SAL8 | C9SZA9 | Cytochrome c oxidase assembly protein COX11. | Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. | 0.913 |
VDBG_01575 | VDBG_17013 | C9SAL8 | C9SZB1 | Cytochrome c oxidase assembly protein COX11. | Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex. | 0.896 |
VDBG_01576 | VDBG_01575 | C9SAL9 | C9SAL8 | Amine oxidase. | Cytochrome c oxidase assembly protein COX11. | 0.871 |
VDBG_01576 | VDBG_01828 | C9SAL9 | C9SBI5 | Amine oxidase. | Uncharacterized protein. | 0.565 |
VDBG_01576 | VDBG_01829 | C9SAL9 | C9SBI6 | Amine oxidase. | SCO2. | 0.719 |
VDBG_01576 | VDBG_02019 | C9SAL9 | C9SC26 | Amine oxidase. | SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. | 0.804 |
VDBG_01576 | VDBG_07103 | C9SAL9 | C9SQ68 | Amine oxidase. | Protoheme IX farnesyltransferase. | 0.813 |
VDBG_01576 | VDBG_08042 | C9SAL9 | C9ST17 | Amine oxidase. | Electron transfer protein. | 0.722 |
VDBG_01576 | VDBG_08335 | C9SAL9 | C9STR4 | Amine oxidase. | Cyclopropane-fatty-acyl-phospholipid synthase. | 0.743 |
VDBG_01576 | VDBG_17008 | C9SAL9 | C9SZA6 | Amine oxidase. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.881 |
VDBG_01576 | VDBG_17011 | C9SAL9 | C9SZA9 | Amine oxidase. | Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. | 0.913 |
VDBG_01576 | VDBG_17013 | C9SAL9 | C9SZB1 | Amine oxidase. | Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex. | 0.896 |
VDBG_01828 | VDBG_01575 | C9SBI5 | C9SAL8 | Uncharacterized protein. | Cytochrome c oxidase assembly protein COX11. | 0.565 |
page 1 of 4