STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_02496Zinc finger protein. (812 aa)    
Predicted Functional Partners:
VDBG_02497
SWIB domain-containing protein.
 
      0.724
VDBG_08717
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.682
VDBG_08466
Elongation factor 3.
   
 
 0.676
VDBG_03440
40S ribosomal protein S20.
    
 
 0.659
VDBG_08462
GYF domain-containing protein.
    
 
 0.640
VDBG_01110
Zfp294 protein.
    
 
 0.627
VDBG_02248
mRNA export factor elf1.
   
 
 0.613
VDBG_07046
G-protein beta subunit.
    
 
 0.609
VDBG_03441
CUE domain-containing protein.
    
 
 0.581
VDBG_07051
Translational activator GCN1.
    
 
 0.577
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.