STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_02016Uncharacterized protein. (181 aa)    
Predicted Functional Partners:
VDBG_00262
Exosome complex exonuclease RRP4.
   
 0.999
VDBG_05847
RNase_PH domain-containing protein.
   
 0.999
VDBG_06740
Exosome complex exonuclease RRP45.
   
 0.999
VDBG_02195
Exosome complex exonuclease RRP43.
   
 0.998
VDBG_00700
Exosome complex exonuclease RRP40.
   
 0.993
VDBG_03680
RNase_PH domain-containing protein.
   
 0.992
VDBG_05820
ATP-dependent RNA helicase DOB1.
   
 0.992
VDBG_09932
Exosome complex exonuclease RRP41.
   
 0.991
VDBG_04140
3'-5' exoribonuclease CSL4.
   
 0.973
VDBG_04141
Sec2p domain-containing protein.
   
 0.973
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.