Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_01186 | VDBG_02017 | C9S5L3 | C9SC24 | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Predicted protein. | 0.443 |
VDBG_01186 | VDBG_02051 | C9S5L3 | C9SC58 | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | ATP synthase D chain. | 0.801 |
VDBG_01186 | VDBG_03405 | C9S5L3 | C9SE49 | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase polypeptide V. | 0.998 |
VDBG_01186 | VDBG_04168 | C9S5L3 | C9SG45 | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Cytochrome c oxidase polypeptide VI. | 0.999 |
VDBG_01654 | VDBG_02017 | C9SAX1 | C9SC24 | Uncharacterized protein. | Predicted protein. | 0.487 |
VDBG_01654 | VDBG_08598 | C9SAX1 | C9SUH7 | Uncharacterized protein. | Mitochondrial intermembrane space import and assembly protein 40-B. | 0.559 |
VDBG_01654 | VDBG_09705 | C9SAX1 | C9SXT0 | Uncharacterized protein. | Sulfhydryl oxidase. | 0.576 |
VDBG_02017 | VDBG_01186 | C9SC24 | C9S5L3 | Predicted protein. | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.443 |
VDBG_02017 | VDBG_01654 | C9SC24 | C9SAX1 | Predicted protein. | Uncharacterized protein. | 0.487 |
VDBG_02017 | VDBG_02051 | C9SC24 | C9SC58 | Predicted protein. | ATP synthase D chain. | 0.470 |
VDBG_02017 | VDBG_03405 | C9SC24 | C9SE49 | Predicted protein. | Cytochrome c oxidase polypeptide V. | 0.438 |
VDBG_02017 | VDBG_04168 | C9SC24 | C9SG45 | Predicted protein. | Cytochrome c oxidase polypeptide VI. | 0.437 |
VDBG_02017 | VDBG_06212 | C9SC24 | C9SMT8 | Predicted protein. | Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. | 0.493 |
VDBG_02017 | VDBG_06605 | C9SC24 | C9SNY0 | Predicted protein. | UBA domain-containing protein. | 0.493 |
VDBG_02017 | VDBG_08598 | C9SC24 | C9SUH7 | Predicted protein. | Mitochondrial intermembrane space import and assembly protein 40-B. | 0.577 |
VDBG_02017 | VDBG_08814 | C9SC24 | C9SV89 | Predicted protein. | Mitochondrial import inner membrane translocase subunit TIM13; Belongs to the small Tim family. | 0.461 |
VDBG_02017 | VDBG_09705 | C9SC24 | C9SXT0 | Predicted protein. | Sulfhydryl oxidase. | 0.452 |
VDBG_02051 | VDBG_01186 | C9SC58 | C9S5L3 | ATP synthase D chain. | Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.801 |
VDBG_02051 | VDBG_02017 | C9SC58 | C9SC24 | ATP synthase D chain. | Predicted protein. | 0.470 |
VDBG_02051 | VDBG_03405 | C9SC58 | C9SE49 | ATP synthase D chain. | Cytochrome c oxidase polypeptide V. | 0.941 |
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