STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_02860PB1 domain-containing protein. (267 aa)    
Predicted Functional Partners:
VDBG_00834
Rho-type GTPase-activating protein.
    
 
 0.945
VDBG_03493
Scd2/ral3.
    
 
 0.915
VDBG_08700
Cell division control protein.
    
 0.904
VDBG_02861
Rho guanine nucleotide exchange factor scd1.
 
      0.900
VDBG_07823
Guanine nucleotide-binding protein subunit beta.
    
 
 0.785
VDBG_02013
Cell division control protein.
    
 0.764
VDBG_08934
Von Willebrand and RING finger domain-containing protein.
    
 0.721
VDBG_01309
Dual specificity phosphatase.
     
 0.616
VDBG_01093
Ras-1.
    
 0.561
VDBG_00306
Ras-2.
    
 0.556
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.