STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_02883Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (412 aa)    
Predicted Functional Partners:
VDBG_08297
Isopentenyl-diphosphate Delta-isomerase.
  
 
 0.994
VDBG_08390
Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.
  
 
 0.990
VDBG_00246
Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.989
VDBG_03370
Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.
 
 
 0.988
VDBG_00286
Geranylgeranyl pyrophosphate synthetase.
  
 0.986
VDBG_03289
Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.
  
 0.875
VDBG_08198
Hydroxymethylglutaryl-CoA synthase.
 
 
 0.848
VDBG_01119
Cytochrome b2.
  
 
 0.842
VDBG_04204
Cytochrome b2.
  
 
 0.842
VDBG_05150
Cytochrome b2; Belongs to the cytochrome b5 family.
  
 
 0.842
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.