STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03222Predicted protein. (245 aa)    
Predicted Functional Partners:
VDBG_06588
BRCT domain-containing protein.
    
 0.722
VDBG_06833
Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.
   
 0.690
VDBG_07731
S-M checkpoint control protein rad4.
   
 
 0.651
VDBG_09700
SMC_N domain-containing protein.
   
 
 0.651
VDBG_09673
Histone H2A; Belongs to the histone H2A family.
    
 0.635
VDBG_07405
Set1 complex component swd1.
   
 0.558
VDBG_05694
Double-strand break repair protein mus-23; Belongs to the MRE11/RAD32 family.
    
 0.539
VDBG_01625
Set1 complex component ash2.
    
 0.528
VDBG_07227
DNA repair protein RAD50.
    
 0.522
VDBG_05838
SMT3.
    
 0.489
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.