STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03245Uncharacterized protein. (186 aa)    
Predicted Functional Partners:
VDBG_04277
60S ribosomal protein L5.
  
 0.993
VDBG_04817
60S ribosomal protein L35.
  
 0.993
VDBG_06906
60S ribosomal protein L7.
  
 0.993
VDBG_08644
60S ribosomal protein L23a.
  
 0.993
VDBG_00291
60S ribosomal protein L30-1.
   
 0.992
VDBG_09371
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.991
VDBG_09533
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.991
VDBG_01574
60S ribosomal protein L26-1.
  
 0.990
VDBG_02062
60S ribosomal protein L24.
   
 0.990
VDBG_03007
60S ribosomal protein L27-B.
   
 0.990
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.