STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03310Predicted protein. (221 aa)    
Predicted Functional Partners:
VDBG_05572
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
 
 0.688
VDBG_05192
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.652
VDBG_07668
Nucleoside diphosphate kinase.
     
 0.628
VDBG_01442
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.570
VDBG_08678
Uncharacterized protein.
   
 
 0.570
VDBG_06733
NUDIX-like domain-containing protein.
    
  0.567
VDBG_02112
Phosphopantothenoylcysteine decarboxylase.
  
 
 0.566
VDBG_03491
Bifunctional dihydrofolate reductase-thymidylate synthase.
    
 0.543
VDBG_05867
Enolase.
    
  0.533
VDBG_06681
Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.
     
 0.505
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.