STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_02804DDT domain-containing protein. (349 aa)    
Predicted Functional Partners:
VDBG_04293
ISWI chromatin-remodeling complex ATPase ISW2.
    
 0.949
VDBG_02803
DDT domain-containing protein.
 
      0.900
VDBG_02805
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
 
      0.870
VDBG_04435
Predicted protein.
    
 
 0.839
VDBG_01294
ISWI chromatin-remodeling complex ATPase ISW2.
    
 0.778
VDBG_08519
Predicted protein.
    
 0.778
VDBG_04723
Splicing factor 3B subunit 1.
   
 0.672
VDBG_05029
Uncharacterized protein.
    
 0.652
VDBG_08793
DNA-directed RNA polymerases I.
     
 0.592
VDBG_06896
Uncharacterized protein.
    
 0.529
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.