STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03903Proclavaminate amidinohydrolase; Belongs to the arginase family. (372 aa)    
Predicted Functional Partners:
VDBG_00523
Spermidine synthase.
  
 
 0.981
VDBG_08701
Agmatinase; Belongs to the arginase family.
  
  
 
0.909
VDBG_04040
Ornithine decarboxylase.
  
 
 0.785
VDBG_01595
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
   
 0.725
VDBG_03299
Ornithine cyclodeaminase/mu-crystallin family protein.
  
 
 0.682
VDBG_02180
Arg-6.
  
  
 0.672
VDBG_06765
Phenylalanine ammonia-lyase.
  
 
 0.672
VDBG_08166
Phenylalanine ammonia-lyase.
  
 
 0.672
VDBG_08273
Arg-6.
  
  
 0.672
VDBG_06686
Ornithine aminotransferase.
  
 0.654
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.