Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_00851 | VDBG_01098 | C9S7I1 | C9S986 | Elongation factor 2. | Diphthine synthase. | 0.986 |
VDBG_00851 | VDBG_04025 | C9S7I1 | C9SFD0 | Elongation factor 2. | Uncharacterized protein. | 0.795 |
VDBG_00851 | VDBG_04681 | C9S7I1 | C9SHZ9 | Elongation factor 2. | Uncharacterized protein. | 0.980 |
VDBG_00851 | VDBG_04682 | C9S7I1 | C9SI00 | Elongation factor 2. | ATP-binding domain-containing protein. | 0.980 |
VDBG_00851 | VDBG_05263 | C9S7I1 | C9SKD6 | Elongation factor 2. | 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. | 0.926 |
VDBG_00851 | VDBG_07087 | C9S7I1 | C9SQ52 | Elongation factor 2. | Diphthamide biosynthesis protein. | 0.927 |
VDBG_00851 | VDBG_09720 | C9S7I1 | C9SXU5 | Elongation factor 2. | Uncharacterized protein. | 0.849 |
VDBG_01098 | VDBG_00851 | C9S986 | C9S7I1 | Diphthine synthase. | Elongation factor 2. | 0.986 |
VDBG_01098 | VDBG_04025 | C9S986 | C9SFD0 | Diphthine synthase. | Uncharacterized protein. | 0.483 |
VDBG_01098 | VDBG_04681 | C9S986 | C9SHZ9 | Diphthine synthase. | Uncharacterized protein. | 0.906 |
VDBG_01098 | VDBG_04682 | C9S986 | C9SI00 | Diphthine synthase. | ATP-binding domain-containing protein. | 0.906 |
VDBG_01098 | VDBG_05263 | C9S986 | C9SKD6 | Diphthine synthase. | 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. | 0.907 |
VDBG_01098 | VDBG_07087 | C9S986 | C9SQ52 | Diphthine synthase. | Diphthamide biosynthesis protein. | 0.905 |
VDBG_01098 | VDBG_09518 | C9S986 | C9SXL8 | Diphthine synthase. | Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. | 0.452 |
VDBG_01098 | VDBG_09720 | C9S986 | C9SXU5 | Diphthine synthase. | Uncharacterized protein. | 0.625 |
VDBG_04025 | VDBG_00851 | C9SFD0 | C9S7I1 | Uncharacterized protein. | Elongation factor 2. | 0.795 |
VDBG_04025 | VDBG_01098 | C9SFD0 | C9S986 | Uncharacterized protein. | Diphthine synthase. | 0.483 |
VDBG_04025 | VDBG_04681 | C9SFD0 | C9SHZ9 | Uncharacterized protein. | Uncharacterized protein. | 0.626 |
VDBG_04025 | VDBG_04682 | C9SFD0 | C9SI00 | Uncharacterized protein. | ATP-binding domain-containing protein. | 0.626 |
VDBG_04025 | VDBG_05263 | C9SFD0 | C9SKD6 | Uncharacterized protein. | 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. | 0.884 |
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