STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03609Transcription initiation factor TFIID subunit 12. (763 aa)    
Predicted Functional Partners:
VDBG_03708
Transcription initiation factor TFIID subunit 1.
    
 0.999
VDBG_03832
Transcription initiation factor TFIId 127kD subunit.
    
 0.999
VDBG_04843
Transcription initiation factor TFIID subunit 7.
    
 0.999
VDBG_05354
Uncharacterized protein.
   
 0.999
VDBG_05446
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.999
VDBG_06481
TAFII28 domain-containing protein.
    
 0.999
VDBG_07235
Uncharacterized protein.
   
 0.999
VDBG_07593
Transcription initiation factor TFIID complex 60 kDa subunit.
   
 0.999
VDBG_09412
Transcription initiation factor TFIID subunit 5.
   
 0.999
VDBG_02141
SGF29 C-terminal domain-containing protein.
   
 0.997
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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