STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_04281SP-RING-type domain-containing protein. (382 aa)    
Predicted Functional Partners:
VDBG_05838
SMT3.
    
 0.964
VDBG_00656
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.963
VDBG_01677
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.698
VDBG_05536
DNA damage-responsive transcriptional repressor RPH1.
   
 0.687
VDBG_07999
SP-RING-type domain-containing protein.
    
 
 0.672
VDBG_06588
BRCT domain-containing protein.
    
 0.656
VDBG_00992
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
    
 0.617
VDBG_06832
Cullin-4B; Belongs to the cullin family.
     
 0.609
VDBG_02832
DNA repair helicase RAD25.
   
 
  0.597
VDBG_01185
DNA damage-binding protein 1b.
     
 0.588
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.