STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03778Uncharacterized protein. (408 aa)    
Predicted Functional Partners:
VDBG_04935
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.982
VDBG_06784
Vacuolar membrane protein pep3.
    
 
 0.982
VDBG_10196
Vacuolar protein sorting-associated protein.
    
 
 0.982
VDBG_03050
AvaB protein.
   
 
 0.979
VDBG_09367
CNH domain-containing protein.
   
 
 0.979
VDBG_05758
Vacuolar membrane protein.
    
 
 0.977
VDBG_03777
Vps8 domain-containing protein.
 
     0.917
VDBG_03776
Uncharacterized protein.
 
      0.900
VDBG_03430
Vacuolar protein sorting 41.
   
 
 0.683
VDBG_08633
Vacuolar protein sorting-associated protein; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.629
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.