STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_03790RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (258 aa)    
Predicted Functional Partners:
VDBG_06998
WD repeat-containing protein.
   
 0.998
VDBG_07186
mRNA 3'-end-processing protein YTH1.
    
 0.997
VDBG_08759
Serine/threonine-protein phosphatase PP1.
    
 0.997
VDBG_08787
Polyadenylation factor subunit 2.
    
 0.996
VDBG_03450
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.995
VDBG_09853
Cft-1.
    
 0.994
VDBG_00415
MPE1.
    
 0.993
VDBG_05277
Endoribonuclease YSH1.
   
 0.979
VDBG_07406
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.979
VDBG_07127
CID domain-containing protein.
   
 
 0.978
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.