STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_04829Splicing factor U2AF-associated protein. (210 aa)    
Predicted Functional Partners:
VDBG_04723
Splicing factor 3B subunit 1.
    
 
 0.979
VDBG_04814
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.950
VDBG_05117
Pre-mRNA-splicing factor clf1.
   
 
 0.947
VDBG_06363
Splicing factor 3A subunit 2.
   
 
 0.915
VDBG_00928
U2 small nuclear ribonucleoprotein A.
    
 
 0.892
VDBG_03401
Splicing factor 3B subunit 2.
   
 
 0.877
VDBG_08765
Pre-mRNA-splicing factor rse-1.
  
 
 
 0.876
VDBG_01548
LSM domain-containing protein.
   
   0.830
VDBG_01951
Pre-mRNA-splicing factor sap114.
    
 
 0.794
VDBG_00169
Splicing factor 3B subunit 4.
    
 
 0.772
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.