STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_04434Chromatin structure-remodeling complex protein RSC7. (489 aa)    
Predicted Functional Partners:
VDBG_06781
Transcription regulatory protein SNF5.
    
 
 0.961
VDBG_03434
ARID domain-containing protein.
    
 
 0.946
VDBG_04375
Uncharacterized protein; Belongs to the actin family.
   
 0.940
VDBG_08887
SNF2 family ATP-dependent chromatin-remodeling factor snf21.
   
 
 0.911
VDBG_01487
BRM-associated protein.
   
 
 0.903
VDBG_07957
Uncharacterized protein.
    
 
 0.771
VDBG_07447
Chromatin structure-remodeling complex protein RSC2.
    
 
 0.662
VDBG_04330
Transcription regulatory protein SWI3.
    
 
 0.653
VDBG_03426
Histone H3.
    
 0.544
VDBG_07827
Uncharacterized protein.
    
 
 0.533
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.