STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_04457ATP phosphoribosyltransferase. (339 aa)    
Predicted Functional Partners:
VDBG_07236
Histidine biosynthesis trifunctional protein.
 
 
 0.999
VDBG_06274
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
 
 0.997
VDBG_00410
Imidazole glycerol phosphate synthase hisHF.
 
 
 0.996
VDBG_00987
Histidinol-phosphate aminotransferase.
 
  
 0.988
VDBG_00200
Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
 
  
 0.987
VDBG_08888
HET domain-containing protein.
  
 
 0.973
VDBG_08889
5-proFAR isomerase; Belongs to the HisA/HisF family.
  
 
 0.973
VDBG_06585
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
 
 0.896
VDBG_00142
Ribose-phosphate pyrophosphokinase.
  
 
 0.893
VDBG_02464
Ribose-phosphate pyrophosphokinase.
  
 
 0.893
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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