STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_0525740S ribosomal protein S6. (142 aa)    
Predicted Functional Partners:
VDBG_00290
60S ribosomal protein L10.
   
 
 0.999
VDBG_00291
60S ribosomal protein L30-1.
   
 
 0.999
VDBG_00448
40S ribosomal protein S19.
   
 0.999
VDBG_00570
60S ribosomal protein L22.
   
 
 0.999
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.999
VDBG_01067
Bystin.
    
 0.999
VDBG_02085
40S ribosomal protein S4-A.
   
 0.999
VDBG_02135
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.999
VDBG_01574
60S ribosomal protein L26-1.
   
 
 0.999
VDBG_01819
40S ribosomal protein S27.
   
 0.999
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.