STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_05539Gluconate 5-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (290 aa)    
Predicted Functional Partners:
VDBG_08748
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.618
VDBG_07905
3-oxoacyl-[acyl-carrier-protein] reductase.
  
     0.500
VDBG_01675
Predicted protein.
   
 0.488
VDBG_00259
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.433
VDBG_09432
Oxidoreductase.
  
   0.424
VDBG_03216
3-oxoacyl-[acyl-carrier-protein] reductase.
  
     0.401
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.