STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_05870Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)    
Predicted Functional Partners:
VDBG_00790
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
VDBG_01548
LSM domain-containing protein.
   
 0.999
VDBG_05022
SMB.
   
 0.999
VDBG_07519
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
VDBG_03736
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.998
VDBG_06608
Small nuclear ribonucleoprotein Sm D3.
   
 0.998
VDBG_06830
U1 small nuclear ribonucleoprotein.
   
 0.998
VDBG_09899
Small nuclear ribonucleoprotein G.
   
 0.998
VDBG_00928
U2 small nuclear ribonucleoprotein A.
   
 0.997
VDBG_00401
Pre-mRNA-splicing factor prp1.
   
 0.996
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.