STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_06432GFO_IDH_MocA domain-containing protein. (422 aa)    
Predicted Functional Partners:
VDBG_04023
Tryptophan synthase.
     
 0.499
VDBG_03084
Bifunctional protein GAL10.
  
  
 0.473
VDBG_06407
GAL3.
  
 
 0.462
VDBG_02597
Regucalcin.
  
 
 0.417
VDBG_05637
NAD dependent epimerase/dehydratase family protein.
  
 
 0.407
VDBG_06786
dTDP-D-glucose 4,6-dehydratase.
  
 
 0.407
VDBG_07303
NRS/ER.
  
 
 0.407
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.