STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_06836DNA polymerase gamma. (963 aa)    
Predicted Functional Partners:
VDBG_06790
Glycyl-tRNA synthetase.
   
 
 0.918
VDBG_08678
Uncharacterized protein.
   
 
 0.665
VDBG_01302
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
   
  
 0.640
VDBG_04023
Tryptophan synthase.
  
  
 0.637
VDBG_07996
Formamidopyrimidine-DNA glycosylase.
  
  
 0.581
VDBG_06828
Triosephosphate isomerase.
    
 0.574
VDBG_03346
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
  
 0.571
VDBG_05694
Double-strand break repair protein mus-23; Belongs to the MRE11/RAD32 family.
   
 0.543
VDBG_03087
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.534
VDBG_08137
DNA replication ATP-dependent helicase dna2.
   
  
 0.532
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.