VDBG_06882 protein (Verticillium alfalfae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

VDBG_06882

Uncharacterized protein. (881 aa)

Predicted Functional Partners:

VDBG_04487

0.936

VDBG_00662

0.793

VDBG_09872

0.793

VDBG_00144

0.759

VDBG_06810

0.743

VDBG_03819

0.711

VDBG_06647

0.703

VDBG_08864

0.698

VDBG_08268

0.695

VDBG_00765

0.661

Your Current Organism:

Verticillium alfalfae

NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDBG_00144	VDBG_00662	C9S8W0	C9S6R3	Cap binding protein.	ATP-dependent helicase NAM7.	0.802
VDBG_00144	VDBG_00765	C9S8W0	C9S772	Cap binding protein.	Nonsense-mediated mRNA decay protein.	0.710
VDBG_00144	VDBG_03819	C9S8W0	C9SHB6	Cap binding protein.	RNA-binding protein 8A.	0.854
VDBG_00144	VDBG_06647	C9S8W0	C9SP22	Cap binding protein.	Uncharacterized protein.	0.739
VDBG_00144	VDBG_06810	C9S8W0	C9SPI5	Cap binding protein.	Nuclear cap-binding protein subunit 2.	0.999
VDBG_00144	VDBG_06882	C9S8W0	C9SPQ7	Cap binding protein.	Uncharacterized protein.	0.759
VDBG_00144	VDBG_09872	C9S8W0	C9SY97	Cap binding protein.	AAA_12 domain-containing protein.	0.802
VDBG_00662	VDBG_00144	C9S6R3	C9S8W0	ATP-dependent helicase NAM7.	Cap binding protein.	0.802
VDBG_00662	VDBG_00765	C9S6R3	C9S772	ATP-dependent helicase NAM7.	Nonsense-mediated mRNA decay protein.	0.962
VDBG_00662	VDBG_03819	C9S6R3	C9SHB6	ATP-dependent helicase NAM7.	RNA-binding protein 8A.	0.797
VDBG_00662	VDBG_06810	C9S6R3	C9SPI5	ATP-dependent helicase NAM7.	Nuclear cap-binding protein subunit 2.	0.798
VDBG_00662	VDBG_06882	C9S6R3	C9SPQ7	ATP-dependent helicase NAM7.	Uncharacterized protein.	0.793
VDBG_00765	VDBG_00144	C9S772	C9S8W0	Nonsense-mediated mRNA decay protein.	Cap binding protein.	0.710
VDBG_00765	VDBG_00662	C9S772	C9S6R3	Nonsense-mediated mRNA decay protein.	ATP-dependent helicase NAM7.	0.962
VDBG_00765	VDBG_03819	C9S772	C9SHB6	Nonsense-mediated mRNA decay protein.	RNA-binding protein 8A.	0.996
VDBG_00765	VDBG_06647	C9S772	C9SP22	Nonsense-mediated mRNA decay protein.	Uncharacterized protein.	0.893
VDBG_00765	VDBG_06810	C9S772	C9SPI5	Nonsense-mediated mRNA decay protein.	Nuclear cap-binding protein subunit 2.	0.693
VDBG_00765	VDBG_06882	C9S772	C9SPQ7	Nonsense-mediated mRNA decay protein.	Uncharacterized protein.	0.661
VDBG_00765	VDBG_09872	C9S772	C9SY97	Nonsense-mediated mRNA decay protein.	AAA_12 domain-containing protein.	0.962
VDBG_03819	VDBG_00144	C9SHB6	C9S8W0	RNA-binding protein 8A.	Cap binding protein.	0.854