STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07141Glutamate synthase small chain. (258 aa)    
Predicted Functional Partners:
VDBG_07142
Glutamate synthase small chain.
 
     0.951
VDBG_07143
Ferredoxin-dependent glutamate synthase.
 
     0.940
VDBG_07144
Ferredoxin-dependent glutamate synthase.
 
     0.940
VDBG_04332
NADPH:adrenodoxin oxidoreductase, mitochondrial.
  
 0.925
VDBG_05273
Urea amidolyase.
    
 0.757
VDBG_10056
Glutamyl-tRNA(Gln) amidotransferase subunit A.
    
 0.757
VDBG_04023
Tryptophan synthase.
  
  
 0.734
VDBG_00050
Glucose-methanol-choline oxidoreductase.
  
 0.732
VDBG_06650
NAD-specific glutamate dehydrogenase.
  
 0.715
VDBG_05169
GMP synthase.
  
 
 0.609
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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