STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07260MAP kinase kinase skh1/pek1. (513 aa)    
Predicted Functional Partners:
VDBG_01497
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.936
VDBG_06146
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.936
VDBG_03360
Inner centromere protein mis6.
    
 
 0.878
VDBG_06402
Uncharacterized protein.
    
 
 0.878
VDBG_08181
Tubulin beta-2 chain.
    
 
 0.878
VDBG_01314
Myosin regulatory light chain cdc4.
   
 0.721
VDBG_02064
Uncharacterized protein.
   
 0.721
VDBG_02592
Predicted protein.
   
 0.721
VDBG_04469
Calmodulin.
   
 0.721
VDBG_09353
Calmodulin; Belongs to the calmodulin family.
   
 0.721
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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