Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SPB1 | VDBG_07373 | C9SG83 | C9SQY8 | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | Regulator of secondary metabolism LaeA. | 0.493 |
VDBG_00362 | VDBG_07119 | C9S5M9 | C9SQ84 | Cell pattern formation-associated protein stuA. | VeA protein. | 0.577 |
VDBG_00362 | VDBG_07373 | C9S5M9 | C9SQY8 | Cell pattern formation-associated protein stuA. | Regulator of secondary metabolism LaeA. | 0.513 |
VDBG_00362 | VDBG_08855 | C9S5M9 | C9SVD0 | Cell pattern formation-associated protein stuA. | pH-response transcription factor pacC/RIM101. | 0.460 |
VDBG_02568 | VDBG_04492 | C9SDX3 | C9SHG0 | VeA protein. | VelB. | 0.571 |
VDBG_02568 | VDBG_07373 | C9SDX3 | C9SQY8 | VeA protein. | Regulator of secondary metabolism LaeA. | 0.576 |
VDBG_03426 | VDBG_04198 | C9SE93 | C9SG75 | Histone H3. | Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. | 0.986 |
VDBG_03426 | VDBG_05363 | C9SE93 | C9SKN6 | Histone H3. | Orotidine-5'-phosphate decarboxylase. | 0.515 |
VDBG_03426 | VDBG_07373 | C9SE93 | C9SQY8 | Histone H3. | Regulator of secondary metabolism LaeA. | 0.652 |
VDBG_04198 | VDBG_03426 | C9SG75 | C9SE93 | Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. | Histone H3. | 0.986 |
VDBG_04198 | VDBG_07373 | C9SG75 | C9SQY8 | Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. | Regulator of secondary metabolism LaeA. | 0.525 |
VDBG_04492 | VDBG_02568 | C9SHG0 | C9SDX3 | VelB. | VeA protein. | 0.571 |
VDBG_04492 | VDBG_07119 | C9SHG0 | C9SQ84 | VelB. | VeA protein. | 0.710 |
VDBG_04492 | VDBG_07373 | C9SHG0 | C9SQY8 | VelB. | Regulator of secondary metabolism LaeA. | 0.635 |
VDBG_05363 | VDBG_03426 | C9SKN6 | C9SE93 | Orotidine-5'-phosphate decarboxylase. | Histone H3. | 0.515 |
VDBG_05363 | VDBG_07373 | C9SKN6 | C9SQY8 | Orotidine-5'-phosphate decarboxylase. | Regulator of secondary metabolism LaeA. | 0.507 |
VDBG_07119 | VDBG_00362 | C9SQ84 | C9S5M9 | VeA protein. | Cell pattern formation-associated protein stuA. | 0.577 |
VDBG_07119 | VDBG_04492 | C9SQ84 | C9SHG0 | VeA protein. | VelB. | 0.710 |
VDBG_07119 | VDBG_07373 | C9SQ84 | C9SQY8 | VeA protein. | Regulator of secondary metabolism LaeA. | 0.636 |
VDBG_07119 | VDBG_08855 | C9SQ84 | C9SVD0 | VeA protein. | pH-response transcription factor pacC/RIM101. | 0.472 |
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