STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07795Ribosome assembly protein RRB1. (492 aa)    
Predicted Functional Partners:
VDBG_02248
mRNA export factor elf1.
   
   0.958
VDBG_04568
Eukaryotic ribosome biogenesis protein.
   
 
 0.887
VDBG_04107
U3 small nucleolar RNA-associated protein.
  
  
 0.861
VDBG_03864
Nucleolar complex protein.
   
 
 0.853
VDBG_06084
Periodic tryptophan protein.
   
  
 0.846
VDBG_04153
Ribosomal RNA-processing protein.
  
  
 0.845
VDBG_08247
U3 small nucleolar RNA-associated protein.
   
 
 0.836
VDBG_04244
Periodic tryptophan protein.
   
  
 0.832
VDBG_01113
Uncharacterized protein.
   
 
 0.831
VDBG_04015
RNA helicase.
   
   0.817
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.