STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07813Polysaccharide biosynthesis protein vipA/tviB; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (467 aa)    
Predicted Functional Partners:
VDBG_03084
Bifunctional protein GAL10.
  
 
 0.572
VDBG_05637
NAD dependent epimerase/dehydratase family protein.
  
  
 0.541
VDBG_06786
dTDP-D-glucose 4,6-dehydratase.
  
  
 0.541
VDBG_07303
NRS/ER.
  
  
 0.541
VDBG_04735
Sterol-4-alpha-carboxylate 3-dehydrogenase.
  
 0.522
VDBG_00249
Methionine adenosyltransferase 2 subunit beta.
  
 0.500
VDBG_04957
NAD dependent epimerase/dehydratase family protein.
  
 0.492
VDBG_06165
3Beta_HSD domain-containing protein.
  
 0.492
VDBG_01477
Dihydroflavonol-4-reductase.
  
 0.484
VDBG_01526
NADPH-dependent methylglyoxal reductase GRE2.
  
 0.484
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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