STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07829Protein phosphatase 1A. (517 aa)    
Predicted Functional Partners:
VDBG_04396
Mitogen-activated protein kinase.
   
 0.982
VDBG_02315
Protein kinase wis1.
    
 
 0.742
VDBG_05505
Tyrosine-protein phosphatase non-receptor.
    
 
 0.680
VDBG_02528
PNS1; Belongs to the CTL (choline transporter-like) family.
 
      0.659
VDBG_04173
Calcium influx-promoting protein ehs1.
   
 0.648
VDBG_07830
DOA4-independent degradation protein.
 
      0.638
VDBG_02117
Mitogen-activated protein kinase.
   
 0.582
VDBG_00436
Methionyl-tRNA transformylase.
  
   0.552
VDBG_00405
Protein phosphatase 1G.
    
 
0.540
VDBG_04896
Protein phosphatase; Belongs to the PP2C family.
    
 
 0.516
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.