STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08021RING finger protein. (757 aa)    
Predicted Functional Partners:
VDBG_08022
Ubiquitin.
 
  
 0.730
VDBG_00752
60S ribosomal protein L40.
 
   
  0.652
VDBG_05210
Ubiquitin-like domain-containing protein.
    
 0.644
VDBG_00306
Ras-2.
    
  0.593
VDBG_01093
Ras-1.
    
  0.593
VDBG_02102
GTPase HRas.
    
  0.593
VDBG_03557
40S ribosomal protein S27a.
 
  
 0.591
VDBG_08212
CIA30 family protein.
    
 0.541
VDBG_08213
Uncharacterized protein.
    
 0.541
VDBG_02566
Integral membrane protein.
    
 0.529
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.