STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08212CIA30 family protein. (233 aa)    
Predicted Functional Partners:
VDBG_08466
Elongation factor 3.
   
 
 0.991
VDBG_02248
mRNA export factor elf1.
   
 
 0.990
VDBG_06157
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.974
VDBG_03440
40S ribosomal protein S20.
   
 0.970
VDBG_08717
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.970
VDBG_05900
40S ribosomal protein S13.
   
 0.969
VDBG_07341
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.969
VDBG_05590
40S ribosomal protein S5-B.
   
 0.962
VDBG_07050
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.962
VDBG_02053
60S ribosomal protein L14-B.
   
 0.961
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.