Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_00489 | VDBG_01041 | C9S643 | C9S8P0 | CCR4-NOT transcription complex subunit 3. | Transcriptional regulator involved in cell cycle regulation. | 0.976 |
VDBG_00489 | VDBG_01042 | C9S643 | C9S8P1 | CCR4-NOT transcription complex subunit 3. | CUE domain-containing protein. | 0.964 |
VDBG_00489 | VDBG_07902 | C9S643 | C9SSM7 | CCR4-NOT transcription complex subunit 3. | General negative regulator of transcription subunit 4. | 0.995 |
VDBG_00489 | VDBG_08214 | C9S643 | C9STI9 | CCR4-NOT transcription complex subunit 3. | Cell differentiation protein rcd1. | 0.999 |
VDBG_00489 | VDBG_08668 | C9S643 | C9SUU3 | CCR4-NOT transcription complex subunit 3. | FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] | 0.703 |
VDBG_00489 | VDBG_08730 | C9S643 | C9SV05 | CCR4-NOT transcription complex subunit 3. | CCR4-NOT transcription complex subunit 8. | 0.995 |
VDBG_00489 | VDBG_09319 | C9S643 | C9SWP4 | CCR4-NOT transcription complex subunit 3. | Uncharacterized protein. | 0.999 |
VDBG_00489 | VDBG_09459 | C9S643 | C9SXF9 | CCR4-NOT transcription complex subunit 3. | Glucose-repressible alcohol dehydrogenase transcriptional effector. | 0.987 |
VDBG_01041 | VDBG_00489 | C9S8P0 | C9S643 | Transcriptional regulator involved in cell cycle regulation. | CCR4-NOT transcription complex subunit 3. | 0.976 |
VDBG_01041 | VDBG_05820 | C9S8P0 | C9SJU7 | Transcriptional regulator involved in cell cycle regulation. | ATP-dependent RNA helicase DOB1. | 0.636 |
VDBG_01041 | VDBG_07902 | C9S8P0 | C9SSM7 | Transcriptional regulator involved in cell cycle regulation. | General negative regulator of transcription subunit 4. | 0.955 |
VDBG_01041 | VDBG_08214 | C9S8P0 | C9STI9 | Transcriptional regulator involved in cell cycle regulation. | Cell differentiation protein rcd1. | 0.976 |
VDBG_01041 | VDBG_08668 | C9S8P0 | C9SUU3 | Transcriptional regulator involved in cell cycle regulation. | FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] | 0.505 |
VDBG_01041 | VDBG_08730 | C9S8P0 | C9SV05 | Transcriptional regulator involved in cell cycle regulation. | CCR4-NOT transcription complex subunit 8. | 0.974 |
VDBG_01041 | VDBG_09319 | C9S8P0 | C9SWP4 | Transcriptional regulator involved in cell cycle regulation. | Uncharacterized protein. | 0.977 |
VDBG_01041 | VDBG_09459 | C9S8P0 | C9SXF9 | Transcriptional regulator involved in cell cycle regulation. | Glucose-repressible alcohol dehydrogenase transcriptional effector. | 0.957 |
VDBG_01042 | VDBG_00489 | C9S8P1 | C9S643 | CUE domain-containing protein. | CCR4-NOT transcription complex subunit 3. | 0.964 |
VDBG_01042 | VDBG_05820 | C9S8P1 | C9SJU7 | CUE domain-containing protein. | ATP-dependent RNA helicase DOB1. | 0.636 |
VDBG_01042 | VDBG_07902 | C9S8P1 | C9SSM7 | CUE domain-containing protein. | General negative regulator of transcription subunit 4. | 0.932 |
VDBG_01042 | VDBG_08214 | C9S8P1 | C9STI9 | CUE domain-containing protein. | Cell differentiation protein rcd1. | 0.964 |
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