STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08420XAP5 domain-containing protein. (378 aa)    
Predicted Functional Partners:
VDBG_01981
Pre-mRNA-splicing factor SLU7.
   
 
  0.892
VDBG_03904
Pre-mRNA-processing factor 17.
   
 
  0.880
VDBG_04087
Uncharacterized protein.
    
  0.833
VDBG_03387
Uncharacterized protein.
   
 
  0.830
VDBG_04674
RNA binding domain-containing protein.
   
  0.636
VDBG_05239
RRM domain-containing protein.
   
  0.632
VDBG_05183
Sde2_N_Ubi domain-containing protein.
     
 0.627
VDBG_02309
Pre-mRNA-splicing factor CWC25.
   
 
  0.611
VDBG_06085
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
    
  0.590
VDBG_08886
WD repeat-containing protein.
   
 
  0.589
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.