Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_01693 | VDBG_08522 | C9SB34 | C9SUA1 | Lovastatin nonaketide synthase. | Phenyloxazoline synthase mbtB. | 0.474 |
VDBG_03779 | VDBG_08522 | C9SH76 | C9SUA1 | Uncharacterized protein. | Phenyloxazoline synthase mbtB. | 0.444 |
VDBG_03779 | VDBG_09823 | C9SH76 | C9SY48 | Uncharacterized protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.954 |
VDBG_04023 | VDBG_06274 | C9SFC8 | C9SN00 | Tryptophan synthase. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.989 |
VDBG_04023 | VDBG_06681 | C9SFC8 | C9SP56 | Tryptophan synthase. | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 0.999 |
VDBG_04023 | VDBG_07236 | C9SFC8 | C9SQK1 | Tryptophan synthase. | Histidine biosynthesis trifunctional protein. | 0.991 |
VDBG_04023 | VDBG_08522 | C9SFC8 | C9SUA1 | Tryptophan synthase. | Phenyloxazoline synthase mbtB. | 0.528 |
VDBG_04992 | VDBG_08522 | C9SIW0 | C9SUA1 | Phenolpthiocerol synthesis polyketide synthase ppsA. | Phenyloxazoline synthase mbtB. | 0.569 |
VDBG_06236 | VDBG_06681 | C9SMW2 | C9SP56 | 4-coumarate-CoA ligase. | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 0.487 |
VDBG_06236 | VDBG_08522 | C9SMW2 | C9SUA1 | 4-coumarate-CoA ligase. | Phenyloxazoline synthase mbtB. | 0.463 |
VDBG_06236 | VDBG_09823 | C9SMW2 | C9SY48 | 4-coumarate-CoA ligase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.550 |
VDBG_06274 | VDBG_04023 | C9SN00 | C9SFC8 | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | Tryptophan synthase. | 0.989 |
VDBG_06274 | VDBG_06681 | C9SN00 | C9SP56 | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 0.901 |
VDBG_06274 | VDBG_07236 | C9SN00 | C9SQK1 | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | Histidine biosynthesis trifunctional protein. | 0.997 |
VDBG_06274 | VDBG_08522 | C9SN00 | C9SUA1 | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | Phenyloxazoline synthase mbtB. | 0.680 |
VDBG_06681 | VDBG_04023 | C9SP56 | C9SFC8 | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | Tryptophan synthase. | 0.999 |
VDBG_06681 | VDBG_06236 | C9SP56 | C9SMW2 | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 4-coumarate-CoA ligase. | 0.487 |
VDBG_06681 | VDBG_06274 | C9SP56 | C9SN00 | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.901 |
VDBG_06681 | VDBG_07236 | C9SP56 | C9SQK1 | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | Histidine biosynthesis trifunctional protein. | 0.901 |
VDBG_06681 | VDBG_08522 | C9SP56 | C9SUA1 | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | Phenyloxazoline synthase mbtB. | 0.625 |
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