STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08541Amine oxidase. (417 aa)    
Predicted Functional Partners:
VDBG_05536
DNA damage-responsive transcriptional repressor RPH1.
   
 0.509
VDBG_00706
Phytoene synthase.
   
 
 0.498
VDBG_07304
Squalene synthetase.
   
 
 0.498
VDBG_00370
Chromodomain-helicase-DNA-binding protein.
    
 0.465
VDBG_07735
Uncharacterized protein.
   
 
 0.463
VDBG_05861
Histone deacetylase phd1.
    
 0.426
VDBG_07293
Histone deacetylase.
    
 0.426
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.