STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08545Sarcosine oxidase. (441 aa)    
Predicted Functional Partners:
VDBG_03593
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.930
VDBG_07049
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.930
VDBG_02257
Glycine dehydrogenase.
   
 
 0.927
VDBG_03393
Alanine-glyoxylate aminotransferase.
  
 
 0.924
VDBG_05875
Threonine aldolase.
    
 0.923
VDBG_03332
D-amino-acid oxidase.
   
 
 0.909
VDBG_03471
D-amino-acid oxidase.
   
 
 0.909
VDBG_04426
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.448
VDBG_06516
Dimethylglycine dehydrogenase.
  
 0.435
VDBG_07535
N,N-dimethylglycine oxidase.
  
 0.435
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.