STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08613D-lactonohydrolase. (374 aa)    
Predicted Functional Partners:
VDBG_01857
FAD-binding PCMH-type domain-containing protein.
     
  0.900
VDBG_04821
Gluconokinase; Belongs to the gluconokinase GntK/GntV family.
     
  0.900
VDBG_07005
CTP synthase.
  
  
 0.713
VDBG_00760
Eukaryotic translation initiation factor 5B.
  
  
 0.676
VDBG_09742
Translation initiation factor IF-2.
  
  
 0.676
VDBG_05867
Enolase.
  
 
 0.631
VDBG_03669
54S ribosomal protein L9.
  
  
 0.629
VDBG_05400
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
  
 0.629
VDBG_10200
rRNA biogenesis protein RRP5.
  
  
 0.617
VDBG_08644
60S ribosomal protein L23a.
  
    0.608
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.