STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08248Rhamnogalacturonate lyase. (643 aa)    
Predicted Functional Partners:
VDBG_05117
Pre-mRNA-splicing factor clf1.
   
 0.922
VDBG_08227
Pre-mRNA-splicing factor SYF1.
   
 0.912
VDBG_06884
Cell cycle control protein cwf14.
    
 0.901
VDBG_01913
Pre-mRNA-splicing factor slt-11.
   
 0.900
VDBG_02178
Pre-mRNA-splicing factor ISY1.
    
 0.886
VDBG_07012
Intron-binding protein aquarius.
    
  0.862
VDBG_05186
Peptidyl-prolyl cis-trans isomerase E.
   
 0.839
VDBG_08274
Pre-mRNA-splicing factor cef-1.
   
 
 0.836
VDBG_01637
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.820
VDBG_08921
Pre-mRNA-splicing factor SYF2.
   
 
 0.790
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.