STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08718Myotubularin. (777 aa)    
Predicted Functional Partners:
VDBG_07242
Syja_N domain-containing protein.
     
 0.958
VDBG_08222
Polyphosphoinositide phosphatase.
   
 
 0.949
VDBG_03867
1-phosphatidylinositol-3-phosphate 5-kinase FAB1.
     
 0.934
VDBG_01674
Phosphatidylinositol 3-kinase VPS34; Belongs to the PI3/PI4-kinase family.
    
 0.923
VDBG_04391
Phosphatidylinositol 4-kinase LSB6.
     
 0.907
VDBG_05143
Phosphatidylinositol 4-kinase STT4; Belongs to the PI3/PI4-kinase family.
     
 0.907
VDBG_05364
CDP-diacylglycerol-inositol 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.904
VDBG_06813
Phosphatidylinositol 4-kinase PIK1; Belongs to the PI3/PI4-kinase family.
     
 0.903
VDBG_01659
Phosphoinositide phospholipase C.
     
 0.901
VDBG_03354
Phosphoinositide phospholipase C.
     
 0.901
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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