STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_08774S5A_REDUCTASE domain-containing protein. (300 aa)    
Predicted Functional Partners:
VDBG_04085
Dolichol kinase.
     
 0.673
VDBG_05935
Open reading frame.
      
 0.624
VDBG_05337
Alkyl transferase; Belongs to the UPP synthase family.
      
 0.622
VDBG_04725
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.619
VDBG_03477
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
    0.598
VDBG_05577
Synaptic glycoprotein SC2.
    
 
 0.574
VDBG_04233
acidPPc domain-containing protein.
      
 0.555
VDBG_00948
ALG7.
      
 0.513
VDBG_05809
Steroid 5 alpha-reductase.
      
 0.508
VDBG_02742
Coiled-coil domain-containing protein.
      
 0.504
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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