Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_02120 | VDBG_02614 | C9S9E8 | C9SEB2 | Glutathione S-transferase; Belongs to the GST superfamily. | Fumarylacetoacetase. | 0.504 |
VDBG_02120 | VDBG_03010 | C9S9E8 | C9SCT6 | Glutathione S-transferase; Belongs to the GST superfamily. | 4-hydroxyphenylpyruvate dioxygenase. | 0.493 |
VDBG_02120 | VDBG_03148 | C9S9E8 | C9SD74 | Glutathione S-transferase; Belongs to the GST superfamily. | Fumarylacetoacetase. | 0.504 |
VDBG_02120 | VDBG_09167 | C9S9E8 | C9SW92 | Glutathione S-transferase; Belongs to the GST superfamily. | Fumarylacetoacetase. | 0.504 |
VDBG_02120 | VDBG_09257 | C9S9E8 | C9SWI2 | Glutathione S-transferase; Belongs to the GST superfamily. | Homogentisate 1,2-dioxygenase. | 0.494 |
VDBG_02614 | VDBG_02120 | C9SEB2 | C9S9E8 | Fumarylacetoacetase. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.504 |
VDBG_02614 | VDBG_03010 | C9SEB2 | C9SCT6 | Fumarylacetoacetase. | 4-hydroxyphenylpyruvate dioxygenase. | 0.624 |
VDBG_02614 | VDBG_03147 | C9SEB2 | C9SD73 | Fumarylacetoacetase. | Maleylacetoacetate isomerase. | 0.957 |
VDBG_02614 | VDBG_03148 | C9SEB2 | C9SD74 | Fumarylacetoacetase. | Fumarylacetoacetase. | 0.907 |
VDBG_02614 | VDBG_04023 | C9SEB2 | C9SFC8 | Fumarylacetoacetase. | Tryptophan synthase. | 0.588 |
VDBG_02614 | VDBG_06681 | C9SEB2 | C9SP56 | Fumarylacetoacetase. | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 0.424 |
VDBG_02614 | VDBG_09167 | C9SEB2 | C9SW92 | Fumarylacetoacetase. | Fumarylacetoacetase. | 0.908 |
VDBG_02614 | VDBG_09257 | C9SEB2 | C9SWI2 | Fumarylacetoacetase. | Homogentisate 1,2-dioxygenase. | 0.499 |
VDBG_03010 | VDBG_02120 | C9SCT6 | C9S9E8 | 4-hydroxyphenylpyruvate dioxygenase. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.493 |
VDBG_03010 | VDBG_02614 | C9SCT6 | C9SEB2 | 4-hydroxyphenylpyruvate dioxygenase. | Fumarylacetoacetase. | 0.624 |
VDBG_03010 | VDBG_03147 | C9SCT6 | C9SD73 | 4-hydroxyphenylpyruvate dioxygenase. | Maleylacetoacetate isomerase. | 0.633 |
VDBG_03010 | VDBG_03148 | C9SCT6 | C9SD74 | 4-hydroxyphenylpyruvate dioxygenase. | Fumarylacetoacetase. | 0.637 |
VDBG_03010 | VDBG_04023 | C9SCT6 | C9SFC8 | 4-hydroxyphenylpyruvate dioxygenase. | Tryptophan synthase. | 0.637 |
VDBG_03010 | VDBG_05178 | C9SCT6 | C9SK51 | 4-hydroxyphenylpyruvate dioxygenase. | Uncharacterized protein. | 0.730 |
VDBG_03010 | VDBG_06681 | C9SCT6 | C9SP56 | 4-hydroxyphenylpyruvate dioxygenase. | Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. | 0.633 |
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