STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09257Homogentisate 1,2-dioxygenase. (473 aa)    
Predicted Functional Partners:
VDBG_03010
4-hydroxyphenylpyruvate dioxygenase.
  
 0.984
VDBG_03147
Maleylacetoacetate isomerase.
 
 
 0.962
VDBG_08509
3-dehydroshikimate dehydratase.
     
 0.904
VDBG_04023
Tryptophan synthase.
     
 0.635
VDBG_05178
Uncharacterized protein.
  
  
 0.536
VDBG_06681
Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.
     
 0.504
VDBG_03148
Fumarylacetoacetase.
  
 
 0.499
VDBG_02614
Fumarylacetoacetase.
  
 
 0.499
VDBG_09167
Fumarylacetoacetase.
  
 
 0.499
VDBG_02120
Glutathione S-transferase; Belongs to the GST superfamily.
  
 
 0.494
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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