STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09275Tudor domain-containing protein. (311 aa)    
Predicted Functional Partners:
VDBG_00928
U2 small nuclear ribonucleoprotein A.
     
 0.975
VDBG_00609
G-patch domain-containing protein.
  
 
  0.969
VDBG_04814
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 
 0.965
VDBG_08905
Pre-mRNA-splicing factor ini1.
     
 0.964
VDBG_08113
SURP motif domain-containing protein.
    
  0.957
VDBG_01550
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
   
 
  0.956
VDBG_00401
Pre-mRNA-splicing factor prp1.
    
 
 0.947
VDBG_08229
U1 small nuclear ribonucleoprotein A.
   
 0.894
VDBG_04723
Splicing factor 3B subunit 1.
   
 0.803
VDBG_06363
Splicing factor 3A subunit 2.
    
  0.754
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.