Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_00171 | VDBG_00754 | C9S916 | C9S761 | Aminotran_5 domain-containing protein. | Rhodanese domain-containing protein. | 0.646 |
VDBG_00171 | VDBG_05732 | C9S916 | C9SJK9 | Aminotran_5 domain-containing protein. | Mitochondrial iron uptake protein. | 0.869 |
VDBG_00171 | VDBG_06495 | C9S916 | C9SNM0 | Aminotran_5 domain-containing protein. | Adrenodoxin. | 0.799 |
VDBG_00171 | VDBG_07072 | C9S916 | C9SQ37 | Aminotran_5 domain-containing protein. | Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. | 0.954 |
VDBG_00171 | VDBG_07151 | C9S916 | C9SQB6 | Aminotran_5 domain-containing protein. | HIRA-interacting protein. | 0.797 |
VDBG_00171 | VDBG_07342 | C9S916 | C9SQV7 | Aminotran_5 domain-containing protein. | Thiosulfate sulfurtransferase. | 0.629 |
VDBG_00171 | VDBG_08263 | C9S916 | C9SUP3 | Aminotran_5 domain-containing protein. | DinB_2 domain-containing protein. | 0.902 |
VDBG_00171 | VDBG_08594 | C9S916 | C9SUH3 | Aminotran_5 domain-containing protein. | LolT-1. | 0.906 |
VDBG_00171 | VDBG_09561 | C9S916 | C9SWR0 | Aminotran_5 domain-containing protein. | LolT-1. | 0.906 |
VDBG_00171 | uba4 | C9S916 | C9SJ30 | Aminotran_5 domain-containing protein. | Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] | 0.698 |
VDBG_00754 | VDBG_00171 | C9S761 | C9S916 | Rhodanese domain-containing protein. | Aminotran_5 domain-containing protein. | 0.646 |
VDBG_00754 | VDBG_07072 | C9S761 | C9SQ37 | Rhodanese domain-containing protein. | Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. | 0.870 |
VDBG_00754 | VDBG_07342 | C9S761 | C9SQV7 | Rhodanese domain-containing protein. | Thiosulfate sulfurtransferase. | 0.716 |
VDBG_00754 | VDBG_08594 | C9S761 | C9SUH3 | Rhodanese domain-containing protein. | LolT-1. | 0.646 |
VDBG_00754 | VDBG_09561 | C9S761 | C9SWR0 | Rhodanese domain-containing protein. | LolT-1. | 0.646 |
VDBG_00754 | uba4 | C9S761 | C9SJ30 | Rhodanese domain-containing protein. | Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] | 0.682 |
VDBG_05732 | VDBG_00171 | C9SJK9 | C9S916 | Mitochondrial iron uptake protein. | Aminotran_5 domain-containing protein. | 0.869 |
VDBG_05732 | VDBG_06495 | C9SJK9 | C9SNM0 | Mitochondrial iron uptake protein. | Adrenodoxin. | 0.938 |
VDBG_05732 | VDBG_07072 | C9SJK9 | C9SQ37 | Mitochondrial iron uptake protein. | Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. | 0.999 |
VDBG_05732 | VDBG_07151 | C9SJK9 | C9SQB6 | Mitochondrial iron uptake protein. | HIRA-interacting protein. | 0.748 |
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