STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09352SNARE domain-containing protein; Belongs to the syntaxin family. (360 aa)    
Predicted Functional Partners:
VDBG_01577
Vesicle transport v-SNARE protein.
   
 0.999
VDBG_02181
Synaptobrevin.
    
 0.998
VDBG_04007
V-SNARE.
    
 0.997
VDBG_08633
Vacuolar protein sorting-associated protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.994
VDBG_01589
Alpha-soluble NSF attachment protein.
    
 0.988
VDBG_05164
Synaptobrevin; Belongs to the synaptobrevin family.
    
 
 0.982
VDBG_05093
Uncharacterized protein.
    
 0.920
VDBG_05437
Vesicular-fusion protein SEC18.
    
 0.918
VDBG_09684
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.914
VDBG_04547
Cog4 domain-containing protein.
     
 0.898
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.