STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSD1Phosphatidylserine decarboxylase proenzyme 1, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily. (525 aa)    
Predicted Functional Partners:
VDBG_04273
C2 domain-containing protein.
    
0.982
VDBG_08027
Methylene-fatty-acyl-phospholipid synthase.
   
 0.962
VDBG_02099
Choline/ethanolaminephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.960
VDBG_00816
Phosphatidylethanolamine N-methyltransferase.
     
 0.959
VDBG_03826
Cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.959
VDBG_09710
CDP-diacylglycerol-serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.959
VDBG_08629
Membrane-bound O-acyltransferase domain-containing protein; Belongs to the membrane-bound acyltransferase family.
    
 0.955
VDBG_00892
Phospholipase D2.
   
 0.944
VDBG_01724
Phospholipase D1.
   
 0.944
VDBG_08411
Phospholipase.
   
 0.944
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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