STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09706Uroporphyrinogen-III synthase. (301 aa)    
Predicted Functional Partners:
VDBG_06525
Porphobilinogen deaminase.
  
 0.998
VDBG_04494
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.991
VDBG_00315
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 0.981
VDBG_08550
Uncharacterized protein.
  
 
 0.915
VDBG_02339
Uroporphyrinogen-III C-methyltransferase.
  
 
 0.914
VDBG_08269
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.693
VDBG_04944
Amino_oxidase domain-containing protein.
  
  
 0.688
VDBG_03998
Coproporphyrinogen III oxidase.
     
 0.662
VDBG_05759
Chorismate synthase.
     
 0.627
VDBG_03409
2-oxoglutarate dehydrogenase E1.
     
 0.626
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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